First: Principles

Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong?

Thursday, September 13, 2012

Denisovan Gene Sequencing

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What the fossil record shows about Denisovans: They had at least one finger, one toe, and a tooth. View Larger Map This evidence comes...
Monday, September 03, 2012

Coding errors in DNA analysis software

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The problem: A method for analysing similarities in protein sequences is to use a substitution scoring matrix. The matrix will assign a s...
Tuesday, August 21, 2012

On the teaching of genetics

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Rosemary J. Redfield wrote an article on the teaching of genetics that resonated with me. Apparently the standard theory for teaching genet...
Saturday, August 18, 2012

DNA as storage mechanism

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It seems some East Coast researchers are pushing the envelope in storing information in DNA. They encoded a book , roughly 5 megabits of da...
Tuesday, July 03, 2012

Back to school!

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In the fall I'll be enrolling for classes once more. Cathy's now finished her Doctor of Nursing Practice degree so now it's my t...
Wednesday, May 14, 2008

DevExpress Appointment Template Exception: The file 'MyControl.ascx.cs' does not exist.

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The DevExpress ASPxScheduler control is a nice calendar control. It seems to take a fair amount of code and study to get all the bits of ...
Wednesday, April 16, 2008

Dreaming in Code, Scott Rosenberg

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For a while, Scott Rosenberg at Wordyard would send a free copy of his book to anyone who was willing to review it. Thanks, Scott! Here...
Wednesday, February 27, 2008

Blog anniversary!

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Four years ago I took the plunge and started blogging. And today...well, I probably have just about the same number of readers as I did the...
Tuesday, February 12, 2008

Startup secrecy

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SHHHHHHHHHHHHH. Please NO talking about the company to anyone. No blogging, talking, posting, emailing about the company’s particulars, etc…...
Wednesday, January 16, 2008

Bloomington Startup Weekend

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Wow, looks like the Bloomington Startup Weekend is proceeding apace. It was announced today as an official part of the Startup Weekends t...
Thursday, December 06, 2007

A Facebook feed for the open web

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I really don't care that much for Facebook . I don't watch enough movies to take the little quizzes, and I'm not really all that...
Monday, November 19, 2007

Pair Programming vs. Code Reviews

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Jeff Atwood over at Coding Horror is asking for comments on the relative efficiency of these processes. We do both at my company, and while ...
Sunday, November 11, 2007

iFrame scroll to anchor problem

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So on my basketball fan page, HoosierBall , I was working on the schedule display. I had originally set up a simple widget from Zvents, but ...
Thursday, November 08, 2007

Some test code smells

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More of my writeup on the XUnit session I went to nearly two months ago. I hope someday to make all of my note-taking blog entries coherent ...
Wednesday, November 07, 2007

Request could not be submitted for background processing

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Boy, don't you hate it when the request could not be submitted for background processing? I know I do. This is a rather inexplicable err...
Wednesday, October 17, 2007

Michael Gartenberg - Still Not Twittering

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Michael Gartenberg is still not twittering , poor unenlightened soul. He prefers to use Facebook for his minute-to-minute status, and doesn...
Tuesday, October 16, 2007

Bloomington Geek Dinner

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I copied the link up there from the Facebook event page...I have no idea what it will tell you if you're not a member, or even if the li...
Saturday, October 13, 2007

Indy Tech Fest

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Big room has no wifi; smaller room seems to work pretty well. I feel very blind without a net connection. Have I said that before? :) Sessio...
Friday, September 21, 2007

Continuous Integration

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The time between a defect being entered and being found is related to the expense of fixing it Graphing the number of tests over time would ...
Thursday, September 20, 2007

How to work with an open source team

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"Free as in Freedom" "Free as in Beer" http://opensource.org/ Q: Don't people resent when companies take open source...
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